Main
Océane Cassan
Currently searching for a Post-doctoral position
Education
University Claude Bernard (UCBL)
MSc in Computer Science specialized in Artificial Intelligence
Lyon, France
2019 - 2018
National Institute of Applied Sciences (INSA)
Engineering degree in Bioinformatics and Modelling
Lyon, France
2019 - 2014
Research Experience
PhD - BPMP, SIRENE team
Predictive biology and systems biology to learn the regulatory pathways in plants under climate change
Montpellier, France
2022 - 2019
- Statistical inference of the gene regulatory network in Arabidopsis thaliana under elevated CO\(_2\) and nutritional limitations from transcriptomic data
- Genome Wide Association study to identify genetic determinants of mineral status repsonse under elevated CO\(_2\)
- Developement of an interactive suite for transcriptomic analyses and the inference of regulatory networks
- References : Antoine Martin and Sophie Lèbre
6 months research internship - LIRMM, MAB team
Supervised learning to predict chromosomic interactions in the human genome, based on CAGE data and 3C techniques
Montpellier, France
2019
- Reference : Laurent Bréhélin
1 month research internship - LIRMM, MAB team
Sparse logistic regression to model transcription factor combinatorics for gene regulation in human
Montpellier, France
2017
- Reference : Laurent Bréhélin
Professional Experience
Internship in quantitative biology - Nanolive SA
Development of software tools for the 3D detection and tracking of biological objects in label free images
Lausanne, Switzerland
2018
- Reference : Mathieu Frechin
Teaching Experience
Instructor of R for L3 plant biology students
University of Montpellier, France
2022 - 2021
- Good practices and scientific integrity around data analysis
- Data manipulation and visualisation in R
Instructor of Rmarkdown for M1 data science students
University Paul Valery of Montpellier, France
2022 - 2020
Regulatory network inference for M1 plant biology students
Statistical methods, and practical session
University of Montpellier, France
2022
Selected Publications
Inferring and Analyzing Gene Regulatory Networks from Multi-Factorial Expression Data: A Complete and Interactive Suite
Cassan, Océane, Sophie Lèbre, and Antoine Martin. 2021 BMC Genomics 22 (1). https://doi.org/10.1186/s12864‑021‑07659‑2
N/A
2021
Probing Transcription Factor Combinatorics in Different Promoter Classes and in Enhancers
Vandel, Jimmy, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, and Laurent Bréhélin. 2019 BMC Genomics 20 (1): 1–19. https://doi.org/10.1186/s12864-018-5408-0f
N/A
2019