Aside

Océane Cassan

Contact

Skills

Biology : plant biology, next generation sequencing data analysis

Computer science : R, ggplot2, tidyverse, R package developement, Rmarkdown, Shiny, Python, LaTeX, Bash

Disclaimer

Last updated on 2022-01-10.

Main

Océane Cassan

Currently searching for a Post-doctoral position

Education

University Claude Bernard (UCBL)

MSc in Computer Science specialized in Artificial Intelligence

Lyon, France

2019 - 2018

National Institute of Applied Sciences (INSA)

Engineering degree in Bioinformatics and Modelling

Lyon, France

2019 - 2014

Research Experience

PhD - BPMP, SIRENE team

Predictive biology and systems biology to learn the regulatory pathways in plants under climate change

Montpellier, France

2022 - 2019

  • Statistical inference of the gene regulatory network in Arabidopsis thaliana under elevated CO\(_2\) and nutritional limitations from transcriptomic data
  • Genome Wide Association study to identify genetic determinants of mineral status repsonse under elevated CO\(_2\)
  • Developement of an interactive suite for transcriptomic analyses and the inference of regulatory networks
  • References : Antoine Martin and Sophie Lèbre

6 months research internship - LIRMM, MAB team

Supervised learning to predict chromosomic interactions in the human genome, based on CAGE data and 3C techniques

Montpellier, France

2019

  • Reference : Laurent Bréhélin

1 month research internship - LIRMM, MAB team

Sparse logistic regression to model transcription factor combinatorics for gene regulation in human

Montpellier, France

2017

  • Reference : Laurent Bréhélin

Professional Experience

Internship in quantitative biology - Nanolive SA

Development of software tools for the 3D detection and tracking of biological objects in label free images

Lausanne, Switzerland

2018

  • Reference : Mathieu Frechin

Teaching Experience

Instructor of R for L3 plant biology students

Teaching material

University of Montpellier, France

2022 - 2021

  • Good practices and scientific integrity around data analysis
  • Data manipulation and visualisation in R

Instructor of Rmarkdown for M1 data science students

Teaching material

University Paul Valery of Montpellier, France

2022 - 2020

Regulatory network inference for M1 plant biology students

Statistical methods, and practical session

University of Montpellier, France

2022

Selected Publications

Inferring and Analyzing Gene Regulatory Networks from Multi-Factorial Expression Data: A Complete and Interactive Suite

Cassan, Océane, Sophie Lèbre, and Antoine Martin. 2021 BMC Genomics 22 (1). https://doi.org/10.1186/s12864‑021‑07659‑2

N/A

2021

Probing Transcription Factor Combinatorics in Different Promoter Classes and in Enhancers

Vandel, Jimmy, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, and Laurent Bréhélin. 2019 BMC Genomics 20 (1): 1–19. https://doi.org/10.1186/s12864-018-5408-0f

N/A

2019